Effector Biology of Biotrophic Plant Fungal Pathogens: Current Advances and Future Prospects.
Identifieur interne : 000179 ( Main/Exploration ); précédent : 000178; suivant : 000180Effector Biology of Biotrophic Plant Fungal Pathogens: Current Advances and Future Prospects.
Auteurs : Rajdeep Jaswal [Inde] ; Kanti Kiran [Inde] ; Sivasubramanian Rajarammohan [Inde] ; Himanshu Dubey [Inde] ; Pankaj Kumar Singh [Inde] ; Yogesh Sharma [Inde] ; Rupesh Deshmukh [Inde] ; Humira Sonah [Inde] ; Naveen Gupta [Inde] ; T R Sharma [Inde]Source :
- Microbiological research [ 1618-0623 ] ; 2020.
Abstract
The interaction of fungal pathogens with their host requires a novel invading mechanism and the presence of various virulence-associated components responsible for promoting the infection. The small secretory proteins, explicitly known as effector proteins, are one of the prime mechanisms of host manipulation utilized by the pathogen to disarm the host. Several effector proteins are known to translocate from fungus to the plant cell for host manipulation. Many fungal effectors have been identified using genomic, transcriptomic, and bioinformatics approaches. Most of the effector proteins are devoid of any conserved signatures, and their prediction based on sequence homology is very challenging, therefore by combining the sequence consensus based upon machine learning features, multiple tools have also been developed for predicting apoplastic and cytoplasmic effectors. Various post-genomics approaches like transcriptomics of virulent isolates have also been utilized for identifying active consortia of effectors. Significant progress has been made in understanding biotrophic effectors; however, most of it is underway due to their complex interaction with host and complicated recognition and signaling networks. This review discusses advances, and challenges in effector identification and highlighted various features of the potential effector proteins and approaches for understanding their genetics and strategies for regulation.
DOI: 10.1016/j.micres.2020.126567
PubMed: 33080488
Affiliations:
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Department of Microbiology, Panjab University, Chandigarh, Punjab, 160014, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India; Department of Microbiology, Panjab University, Chandigarh, Punjab, 160014</wicri:regionArea><wicri:noRegion>160014</wicri:noRegion></affiliation></author><author><name sortKey="Kiran, Kanti" sort="Kiran, Kanti" uniqKey="Kiran K" first="Kanti" last="Kiran">Kanti Kiran</name><affiliation wicri:level="1"><nlm:affiliation>ICAR-National Institute for Plant Biotechnology, Pusa Campus New Delhi, 110012, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>ICAR-National Institute for Plant Biotechnology, Pusa Campus New Delhi, 110012</wicri:regionArea><wicri:noRegion>110012</wicri:noRegion></affiliation></author><author><name sortKey="Rajarammohan, Sivasubramanian" sort="Rajarammohan, Sivasubramanian" uniqKey="Rajarammohan S" first="Sivasubramanian" last="Rajarammohan">Sivasubramanian Rajarammohan</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306</wicri:regionArea><wicri:noRegion>140306</wicri:noRegion></affiliation></author><author><name sortKey="Dubey, Himanshu" sort="Dubey, Himanshu" uniqKey="Dubey H" first="Himanshu" last="Dubey">Himanshu Dubey</name><affiliation wicri:level="1"><nlm:affiliation>ICAR-National Institute for Plant Biotechnology, Pusa Campus New Delhi, 110012, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>ICAR-National Institute for Plant Biotechnology, Pusa Campus New Delhi, 110012</wicri:regionArea><wicri:noRegion>110012</wicri:noRegion></affiliation></author><author><name sortKey="Singh, Pankaj Kumar" sort="Singh, Pankaj Kumar" uniqKey="Singh P" first="Pankaj Kumar" last="Singh">Pankaj Kumar Singh</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306</wicri:regionArea><wicri:noRegion>140306</wicri:noRegion></affiliation></author><author><name sortKey="Sharma, Yogesh" sort="Sharma, Yogesh" uniqKey="Sharma Y" first="Yogesh" last="Sharma">Yogesh Sharma</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306</wicri:regionArea><wicri:noRegion>140306</wicri:noRegion></affiliation></author><author><name sortKey="Deshmukh, Rupesh" sort="Deshmukh, Rupesh" uniqKey="Deshmukh R" first="Rupesh" last="Deshmukh">Rupesh Deshmukh</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306</wicri:regionArea><wicri:noRegion>140306</wicri:noRegion></affiliation></author><author><name sortKey="Sonah, Humira" sort="Sonah, Humira" uniqKey="Sonah H" first="Humira" last="Sonah">Humira Sonah</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306</wicri:regionArea><wicri:noRegion>140306</wicri:noRegion></affiliation></author><author><name sortKey="Gupta, Naveen" sort="Gupta, Naveen" uniqKey="Gupta N" first="Naveen" last="Gupta">Naveen Gupta</name><affiliation wicri:level="1"><nlm:affiliation>Department of Microbiology, Panjab University, Chandigarh, Punjab, 160014, India. Electronic address: ng.puchd@gmail.com.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Microbiology, Panjab University, Chandigarh, Punjab, 160014</wicri:regionArea><wicri:noRegion>160014</wicri:noRegion></affiliation></author><author><name sortKey="Sharma, T R" sort="Sharma, T R" uniqKey="Sharma T" first="T R" last="Sharma">T R Sharma</name><affiliation wicri:level="1"><nlm:affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India. Electronic address: trsharma1965@gmail.com.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306</wicri:regionArea><wicri:noRegion>140306</wicri:noRegion></affiliation></author></analytic><series><title level="j">Microbiological research</title><idno type="eISSN">1618-0623</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The interaction of fungal pathogens with their host requires a novel invading mechanism and the presence of various virulence-associated components responsible for promoting the infection. The small secretory proteins, explicitly known as effector proteins, are one of the prime mechanisms of host manipulation utilized by the pathogen to disarm the host. Several effector proteins are known to translocate from fungus to the plant cell for host manipulation. Many fungal effectors have been identified using genomic, transcriptomic, and bioinformatics approaches. Most of the effector proteins are devoid of any conserved signatures, and their prediction based on sequence homology is very challenging, therefore by combining the sequence consensus based upon machine learning features, multiple tools have also been developed for predicting apoplastic and cytoplasmic effectors. Various post-genomics approaches like transcriptomics of virulent isolates have also been utilized for identifying active consortia of effectors. Significant progress has been made in understanding biotrophic effectors; however, most of it is underway due to their complex interaction with host and complicated recognition and signaling networks. This review discusses advances, and challenges in effector identification and highlighted various features of the potential effector proteins and approaches for understanding their genetics and strategies for regulation.</div></front></TEI><pubmed><MedlineCitation Status="In-Process" Owner="NLM"><PMID Version="1">33080488</PMID><DateRevised><Year>2020</Year><Month>11</Month><Day>06</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1618-0623</ISSN><JournalIssue CitedMedium="Internet"><Volume>241</Volume><PubDate><Year>2020</Year><Month>Dec</Month></PubDate></JournalIssue><Title>Microbiological research</Title><ISOAbbreviation>Microbiol Res</ISOAbbreviation></Journal><ArticleTitle>Effector Biology of Biotrophic Plant Fungal Pathogens: Current Advances and Future Prospects.</ArticleTitle><Pagination><MedlinePgn>126567</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S0944-5013(20)30435-3</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.micres.2020.126567</ELocationID><Abstract><AbstractText>The interaction of fungal pathogens with their host requires a novel invading mechanism and the presence of various virulence-associated components responsible for promoting the infection. The small secretory proteins, explicitly known as effector proteins, are one of the prime mechanisms of host manipulation utilized by the pathogen to disarm the host. Several effector proteins are known to translocate from fungus to the plant cell for host manipulation. Many fungal effectors have been identified using genomic, transcriptomic, and bioinformatics approaches. Most of the effector proteins are devoid of any conserved signatures, and their prediction based on sequence homology is very challenging, therefore by combining the sequence consensus based upon machine learning features, multiple tools have also been developed for predicting apoplastic and cytoplasmic effectors. Various post-genomics approaches like transcriptomics of virulent isolates have also been utilized for identifying active consortia of effectors. Significant progress has been made in understanding biotrophic effectors; however, most of it is underway due to their complex interaction with host and complicated recognition and signaling networks. This review discusses advances, and challenges in effector identification and highlighted various features of the potential effector proteins and approaches for understanding their genetics and strategies for regulation.</AbstractText><CopyrightInformation>Copyright © 2020 Elsevier GmbH. All rights reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jaswal</LastName><ForeName>Rajdeep</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India; Department of Microbiology, Panjab University, Chandigarh, Punjab, 160014, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kiran</LastName><ForeName>Kanti</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>ICAR-National Institute for Plant Biotechnology, Pusa Campus New Delhi, 110012, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rajarammohan</LastName><ForeName>Sivasubramanian</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Dubey</LastName><ForeName>Himanshu</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>ICAR-National Institute for Plant Biotechnology, Pusa Campus New Delhi, 110012, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Singh</LastName><ForeName>Pankaj Kumar</ForeName><Initials>PK</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sharma</LastName><ForeName>Yogesh</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Deshmukh</LastName><ForeName>Rupesh</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sonah</LastName><ForeName>Humira</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gupta</LastName><ForeName>Naveen</ForeName><Initials>N</Initials><AffiliationInfo><Affiliation>Department of Microbiology, Panjab University, Chandigarh, Punjab, 160014, India. Electronic address: ng.puchd@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sharma</LastName><ForeName>T R</ForeName><Initials>TR</Initials><AffiliationInfo><Affiliation>National Agri-Food Biotechnology Institute (NABI), Mohali, Punjab, 140306, India. Electronic address: trsharma1965@gmail.com.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D016454">Review</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>08</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>Germany</Country><MedlineTA>Microbiol Res</MedlineTA><NlmUniqueID>9437794</NlmUniqueID><ISSNLinking>0944-5013</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Plant fungal pathogens</Keyword><Keyword MajorTopicYN="N">biotrophs</Keyword><Keyword MajorTopicYN="N">effectors</Keyword><Keyword MajorTopicYN="N">genomics</Keyword><Keyword MajorTopicYN="N">host-pathogen interaction</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2019</Year><Month>12</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>07</Month><Day>21</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>07</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>10</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>10</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>10</Month><Day>20</Day><Hour>20</Hour><Minute>11</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">33080488</ArticleId><ArticleId IdType="pii">S0944-5013(20)30435-3</ArticleId><ArticleId IdType="doi">10.1016/j.micres.2020.126567</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Inde</li></country></list><tree><country name="Inde"><noRegion><name sortKey="Jaswal, Rajdeep" sort="Jaswal, Rajdeep" uniqKey="Jaswal R" first="Rajdeep" last="Jaswal">Rajdeep Jaswal</name></noRegion><name sortKey="Deshmukh, Rupesh" sort="Deshmukh, Rupesh" uniqKey="Deshmukh R" first="Rupesh" last="Deshmukh">Rupesh Deshmukh</name><name sortKey="Dubey, Himanshu" sort="Dubey, Himanshu" uniqKey="Dubey H" first="Himanshu" last="Dubey">Himanshu Dubey</name><name sortKey="Gupta, Naveen" sort="Gupta, Naveen" uniqKey="Gupta N" first="Naveen" last="Gupta">Naveen Gupta</name><name sortKey="Kiran, Kanti" sort="Kiran, Kanti" uniqKey="Kiran K" first="Kanti" last="Kiran">Kanti Kiran</name><name sortKey="Rajarammohan, Sivasubramanian" sort="Rajarammohan, Sivasubramanian" uniqKey="Rajarammohan S" first="Sivasubramanian" last="Rajarammohan">Sivasubramanian Rajarammohan</name><name sortKey="Sharma, T R" sort="Sharma, T R" uniqKey="Sharma T" first="T R" last="Sharma">T R Sharma</name><name sortKey="Sharma, Yogesh" sort="Sharma, Yogesh" uniqKey="Sharma Y" first="Yogesh" last="Sharma">Yogesh Sharma</name><name sortKey="Singh, Pankaj Kumar" sort="Singh, Pankaj Kumar" uniqKey="Singh P" first="Pankaj Kumar" last="Singh">Pankaj Kumar Singh</name><name sortKey="Sonah, Humira" sort="Sonah, Humira" uniqKey="Sonah H" first="Humira" last="Sonah">Humira Sonah</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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